The National Collegiate Athletic Association table tennis tournament is held every February of the year-long NCAA season.
Denotes school won 2 out of the 3 divisions in the same year
Denotes school won juniors', men's and women's championship in the same year
| School | Juniors' | Men's | Women's | Total |
|---|---|---|---|---|
| Colegio de San Juan de Letran | 15 | 8 | 4 | 27 |
| De La Salle-College of St. Benilde | 0 | 2 | 7 | 9 |
| San Beda College | 4 | 5 | 0 | 9 |
| San Sebastian College-Recoletos | 4 | 5 | 0 | 9 |
| Mapua Institute of Technology | 2 | 3 | 0 | 5 |
| Philippine Christian University | 1 | 1 | 1 | 3 |
| University of Perpetual Help System DALTA | 0 | 3 | 0 | 3 |
| La Salle Greenhills | 1 | 0 | 0 | 1 |
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